3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCUUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
7ZJX|1|L5|U|2148
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_082 not in the Motif Atlas
Homologous match to IL_8C3A_063
Geometric discrepancy: 0.1395
The information below is about IL_8C3A_063
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.5
Basepair signature
cWW-cWW-tSS-tSH-tHS-cWW-tHS
Number of instances in this motif group
32

Unit IDs

7ZJX|1|L5|C|2145
7ZJX|1|L5|C|2146
7ZJX|1|L5|U|2147
7ZJX|1|L5|U|2148
7ZJX|1|L5|G|2149
7ZJX|1|L5|A|2150
7ZJX|1|L5|A|2151
7ZJX|1|L5|G|2152
*
7ZJX|1|L5|U|2172
7ZJX|1|L5|G|2173
7ZJX|1|L5|G|2174
7ZJX|1|L5|A|2175
7ZJX|1|L5|G|2176

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LF
60S ribosomal protein L4
Chain Lb
Ribosomal protein L26
Chain Lh
Ribosomal protein L32

Coloring options:


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