IL_7ZJX_093

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7ZJX|1|L5|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_093 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1335

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

7ZJX|1|L5|C|2489
7ZJX|1|L5|A|2490
7ZJX|1|L5|G|2491
*
7ZJX|1|L5|C|2528
7ZJX|1|L5|G|2529
7ZJX|1|L5|U|2530
7ZJX|1|L5|G|2531

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lj

60S ribosomal protein L34