3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
7ZJX|1|L5|G|3571
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_100 not in the Motif Atlas
Homologous match to IL_8C3A_083
Geometric discrepancy: 0.0835
The information below is about IL_8C3A_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06455.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

7ZJX|1|L5|A|2693
7ZJX|1|L5|G|2694
7ZJX|1|L5|U|2695
7ZJX|1|L5|C|2696
7ZJX|1|L5|G|2697
7ZJX|1|L5|G|2698
*
7ZJX|1|L5|C|3569
7ZJX|1|L5|U|3570
7ZJX|1|L5|G|3571
7ZJX|1|L5|U|3572

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein uL3
Chain LY
60S ribosomal protein L23

Coloring options:


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