IL_7ZJX_101

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7ZJX|1|L5|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_101 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0971

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|C|2710
7ZJX|1|L5|G|2711
7ZJX|1|L5|U|2712
7ZJX|1|L5|A|2713
7ZJX|1|L5|A|2714
7ZJX|1|L5|C|2715
*
7ZJX|1|L5|G|2720
7ZJX|1|L5|G|2721
7ZJX|1|L5|A|2722
7ZJX|1|L5|U|2723
7ZJX|1|L5|A|2724
7ZJX|1|L5|A|2725
7ZJX|1|L5|G|2726

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sl

60S ribosomal protein L41