IL_7ZJX_108

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(PSU)C*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_108 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2406

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

7ZJX|1|L5|U|3426
7ZJX|1|L5|PSU|3427
7ZJX|1|L5|C|3428
*
7ZJX|1|L5|G|3551
7ZJX|1|L5|G|3552
7ZJX|1|L5|A|3553

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain Lr

60S ribosomal protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sl

60S ribosomal protein L41