3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCU*G(OMG)U
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_111 not in the Motif Atlas
Geometric match to IL_2ZNI_001
Geometric discrepancy: 0.1194
The information below is about IL_2ZNI_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

7ZJX|1|L5|G|3437
7ZJX|1|L5|C|3438
7ZJX|1|L5|U|3439
*
7ZJX|1|L5|G|3475
7ZJX|1|L5|OMG|3476
7ZJX|1|L5|U|3477

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LD
60S ribosomal protein uL2
Chain S2
Small subunit ribosomal RNA; SSU rRNA
Chain SM
40S ribosomal protein S3a

Coloring options:


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