IL_7ZJX_118

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*A(OMC)GCG

Length

18 nucleotides

Bulged bases

7ZJX|1|L5|C|3523, 7ZJX|1|L5|C|3542

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_118 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.5208

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7ZJX|1|L5|C|3513
7ZJX|1|L5|5MC|3514
7ZJX|1|L5|A|3515
7ZJX|1|L5|A|3516
7ZJX|1|L5|A2M|3517
7ZJX|1|L5|U|3518
7ZJX|1|L5|G|3519
7ZJX|1|L5|C|3520
7ZJX|1|L5|C|3521
7ZJX|1|L5|U|3522
7ZJX|1|L5|C|3523
7ZJX|1|L5|OMG|3524
7ZJX|1|L5|U|3525
*
7ZJX|1|L5|A|3539
7ZJX|1|L5|OMC|3540
7ZJX|1|L5|G|3541
7ZJX|1|L5|C|3542
7ZJX|1|L5|G|3543

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sl

60S ribosomal protein L41