IL_7ZJX_120

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_120 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.1229

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|G|3627
7ZJX|1|L5|C|3628
7ZJX|1|L5|G|3629
7ZJX|1|L5|G|3630
*
7ZJX|1|L5|U|4309
7ZJX|1|L5|A|4310
7ZJX|1|L5|C|4311

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LR

60S ribosomal protein uL13