IL_7ZJX_140

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7ZJX|1|L5|U|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_140 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1207

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7ZJX|1|L5|G|4151
7ZJX|1|L5|U|4152
7ZJX|1|L5|G|4153
*
7ZJX|1|L5|U|4181
7ZJX|1|L5|U|4182
7ZJX|1|L5|U|4183
7ZJX|1|L5|U|4184
7ZJX|1|L5|U|4185

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LL

Ribosomal protein L10