3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_142 not in the Motif Atlas
Geometric match to IL_7A0S_087
Geometric discrepancy: 0.1932
The information below is about IL_7A0S_087
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

7ZJX|1|L5|C|4158
7ZJX|1|L5|C|4159
7ZJX|1|L5|A|4160
7ZJX|1|L5|A|4161
7ZJX|1|L5|G|4162
*
7ZJX|1|L5|C|4172
7ZJX|1|L5|G|4173
7ZJX|1|L5|A|4174
7ZJX|1|L5|C|4175
7ZJX|1|L5|G|4176

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
Ribosomal protein L10
Chain Lp
60S ribosomal protein L40

Coloring options:


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