IL_7ZJX_147

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

7ZJX|1|L5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_147 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3792

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

7ZJX|1|L5|U|4214
7ZJX|1|L5|U|4215
7ZJX|1|L5|G|4216
*
7ZJX|1|L5|C|4231
7ZJX|1|L5|C|4232
7ZJX|1|L5|A|4233
7ZJX|1|L5|A|4234
7ZJX|1|L5|G|4235

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9

Chain LR

60S ribosomal protein uL13

Chain Lp

60S ribosomal protein L40