3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
G(PSU)U*AAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_154 not in the Motif Atlas
Geometric match to IL_2ET8_001
Geometric discrepancy: 0.1649
The information below is about IL_2ET8_001
Detailed Annotation
Stack and bulge
Broad Annotation
Stack and bulge
Motif group
IL_31737.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

7ZJX|1|L5|G|4324
7ZJX|1|L5|PSU|4325
7ZJX|1|L5|U|4326
*
7ZJX|1|L5|A|4469
7ZJX|1|L5|A|4470
7ZJX|1|L5|C|4471

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein uL3

Coloring options:


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