IL_7ZJX_162

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7ZJX|1|L5|A|4454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_162 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.234

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7ZJX|1|L5|G|4426
7ZJX|1|L5|A|4427
7ZJX|1|L5|U|4428
7ZJX|1|L5|U|4429
7ZJX|1|L5|A|4430
7ZJX|1|L5|U|4431
*
7ZJX|1|L5|A|4451
7ZJX|1|L5|G|4452
7ZJX|1|L5|A|4453
7ZJX|1|L5|A|4454
7ZJX|1|L5|U|4455
7ZJX|1|L5|C|4456

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9

Chain LR

60S ribosomal protein uL13

Chain Lp

60S ribosomal protein L40