IL_7ZJX_164

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGC*GAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_164 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3817

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7ZJX|1|L5|G|4489
7ZJX|1|L5|G|4490
7ZJX|1|L5|A|4491
7ZJX|1|L5|G|4492
7ZJX|1|L5|C|4493
*
7ZJX|1|L5|G|4693
7ZJX|1|L5|A|4694
7ZJX|1|L5|A|4695
7ZJX|1|L5|C|4696
7ZJX|1|L5|C|4697

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Li

60S ribosomal protein L35a