IL_7ZJX_166
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 7ZJX|1|L5|C|4504, 7ZJX|1|L5|U|4505, 7ZJX|1|L5|A|4511, 7ZJX|1|L5|G|4609, 7ZJX|1|L5|C|4610, 7ZJX|1|L5|G|4612, 7ZJX|1|L5|A|4615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_166 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.563
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
7ZJX|1|L5|C|4503
7ZJX|1|L5|C|4504
7ZJX|1|L5|U|4505
7ZJX|1|L5|C|4506
7ZJX|1|L5|G|4507
7ZJX|1|L5|G|4508
7ZJX|1|L5|A|4509
7ZJX|1|L5|U|4510
7ZJX|1|L5|A|4511
7ZJX|1|L5|G|4512
7ZJX|1|L5|C|4513
*
7ZJX|1|L5|G|4607
7ZJX|1|L5|U|4608
7ZJX|1|L5|G|4609
7ZJX|1|L5|C|4610
7ZJX|1|L5|G|4611
7ZJX|1|L5|G|4612
7ZJX|1|L5|A|4613
7ZJX|1|L5|G|4614
7ZJX|1|L5|A|4615
7ZJX|1|L5|G|4616
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L6
- Chain LK
- 60S ribosomal protein L9
- Chain LP
- 60S ribosomal protein L14
- Chain LR
- 60S ribosomal protein uL13
- Chain LV
- 60S ribosomal protein eL20
Coloring options: