IL_7ZJX_175

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)A*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_175 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2765

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7ZJX|1|L5|G|4748
7ZJX|1|L5|PSU|4749
7ZJX|1|L5|A|4750
*
7ZJX|1|L5|U|4776
7ZJX|1|L5|A|4777
7ZJX|1|L5|U|4778

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LZ

Ribosomal protein L24