IL_7ZJX_178

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

7ZJX|1|L7|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_178 not in the Motif Atlas

Homologous match to IL_5TBW_372

Geometric discrepancy: 0.179

The information below is about IL_5TBW_372

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7ZJX|1|L7|C|15
7ZJX|1|L7|A|16
*
7ZJX|1|L7|U|62
7ZJX|1|L7|C|63
7ZJX|1|L7|G|64

Current chains

Chain L7

5S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LL

Ribosomal protein L10

Chain LM

60S ribosomal protein L11