IL_7ZJX_195

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_195 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1892

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7ZJX|1|S2|U|110
7ZJX|1|S2|A|111
7ZJX|1|S2|U|112
*
7ZJX|1|S2|A|350
7ZJX|1|S2|C|351
7ZJX|1|S2|G|352

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain ST

40S ribosomal protein S8

Chain SW

40S ribosomal protein S11