IL_7ZJX_213

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

7ZJX|1|S2|G|601

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_213 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.0917

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

7ZJX|1|S2|A|600
7ZJX|1|S2|G|601
7ZJX|1|S2|OMG|602
7ZJX|1|S2|G|603
7ZJX|1|S2|C|604
7ZJX|1|S2|A|605
7ZJX|1|S2|A|606
7ZJX|1|S2|G|607
*
7ZJX|1|S2|C|637
7ZJX|1|S2|U|638

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S30

Chain SN

40S ribosomal protein uS5

Chain SU

40S ribosomal protein S9