IL_7ZJX_229

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_229 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1036

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7ZJX|1|S2|A|923
7ZJX|1|S2|G|924
*
7ZJX|1|S2|C|1020
7ZJX|1|S2|A|1021
7ZJX|1|S2|U|1022
7ZJX|1|S2|U|1023

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S27

Chain SY

40S ribosomal protein S13

Chain Sh

40S ribosomal protein S15a