IL_7ZJX_234

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7ZJX|1|S2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_234 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1088

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7ZJX|1|S2|G|953
7ZJX|1|S2|C|954
7ZJX|1|S2|U|955
7ZJX|1|S2|A|956
7ZJX|1|S2|G|957
*
7ZJX|1|S2|C|968
7ZJX|1|S2|U|969
7ZJX|1|S2|U|970
7ZJX|1|S2|G|971
7ZJX|1|S2|G|972
7ZJX|1|S2|A|973
7ZJX|1|S2|C|974
7ZJX|1|S2|C|975

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SM

40S ribosomal protein S3a

Chain SZ

40S ribosomal protein uS11