IL_7ZJX_241
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_241 not in the Motif Atlas
- Geometric match to IL_4V88_440
- Geometric discrepancy: 0.1909
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7ZJX|1|S2|G|1169
7ZJX|1|S2|G|1170
7ZJX|1|S2|A|1171
7ZJX|1|S2|G|1172
7ZJX|1|S2|U|1173
7ZJX|1|S2|A|1174
7ZJX|1|S2|PSU|1175
7ZJX|1|S2|G|1176
*
7ZJX|1|S2|U|1187
7ZJX|1|S2|G|1188
7ZJX|1|S2|A|1189
7ZJX|1|S2|A|1190
7ZJX|1|S2|A|1191
7ZJX|1|S2|C|1192
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Si
- 40S ribosomal protein S23
- Chain Sl
- 60S ribosomal protein L41
Coloring options: