IL_7ZJX_242

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)U*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_242 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1087

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

7ZJX|1|S2|G|1177
7ZJX|1|S2|PSU|1178
7ZJX|1|S2|U|1179
*
7ZJX|1|S2|A|1184
7ZJX|1|S2|G|1185
7ZJX|1|S2|C|1186

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lr

60S ribosomal protein eL43

Chain Sl

60S ribosomal protein L41