IL_7ZJX_252
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACA*UUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_252 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.3382
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7ZJX|1|S2|G|1291
7ZJX|1|S2|A|1292
7ZJX|1|S2|C|1293
7ZJX|1|S2|A|1294
*
7ZJX|1|S2|U|1307
7ZJX|1|S2|U|1308
7ZJX|1|S2|U|1309
7ZJX|1|S2|C|1310
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain B
- Selenocysteine insertion sequence-binding protein 2
- Chain S
- Selenocysteine insertion sequence 1; SECIS_1
- Chain SD
- Ubiquitin carboxyl extension protein 80
- Chain SH
- 40S ribosomal protein S29
- Chain SV
- S10_plectin domain-containing protein
- Chain SX
- 40S ribosomal protein S12
- Chain Sa
- 40S ribosomal protein S15
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