IL_7ZJX_261

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

7ZJX|1|S2|C|1404, 7ZJX|1|S2|U|1405

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_261 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1692

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZJX|1|S2|A|1403
7ZJX|1|S2|C|1404
7ZJX|1|S2|U|1405
7ZJX|1|S2|A|1406
*
7ZJX|1|S2|U|1442
7ZJX|1|S2|OMU|1443
7ZJX|1|S2|C|1444
7ZJX|1|S2|U|1445

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

Guanine nucleotide-binding protein subunit beta-2-like 1

Chain Sb

40S ribosomal protein uS9

Chain Sf

40S ribosomal protein S20