IL_7ZJX_262

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

7ZJX|1|S2|C|1434, 7ZJX|1|S2|C|1435, 7ZJX|1|S2|C|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_262 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2623

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7ZJX|1|S2|U|1409
7ZJX|1|S2|A|1410
*
7ZJX|1|S2|U|1433
7ZJX|1|S2|C|1434
7ZJX|1|S2|C|1435
7ZJX|1|S2|C|1436
7ZJX|1|S2|C|1437
7ZJX|1|S2|C|1438
7ZJX|1|S2|A|1439

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein uS9

Chain Sf

40S ribosomal protein S20