IL_7ZJX_269

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7ZJX|1|S2|C|1702, 7ZJX|1|S2|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_269 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0975

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7ZJX|1|S2|C|1701
7ZJX|1|S2|C|1702
7ZJX|1|S2|G|1703
*
7ZJX|1|S2|C|1834
7ZJX|1|S2|A|1835
7ZJX|1|S2|A|1836
7ZJX|1|S2|G|1837

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein eS26