IL_7ZJX_273

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_273 not in the Motif Atlas

Geometric match to IL_4J50_002

Geometric discrepancy: 0.125

The information below is about IL_4J50_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7ZJX|1|S2|U|1715
7ZJX|1|S2|A|1716
7ZJX|1|S2|C|1717
*
7ZJX|1|S2|G|1818
7ZJX|1|S2|A|1819
7ZJX|1|S2|A|1820

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Si

40S ribosomal protein S23

Chain Sl

60S ribosomal protein L41