IL_7ZJX_279

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_279 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1086

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7ZJX|1|S2|C|1743
7ZJX|1|S2|G|1744
7ZJX|1|S2|G|1745
7ZJX|1|S2|A|1746
7ZJX|1|S2|U|1747
*
7ZJX|1|S2|A|1789
7ZJX|1|S2|G|1790
7ZJX|1|S2|A|1791
7ZJX|1|S2|A|1792
7ZJX|1|S2|G|1793

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LZ

Ribosomal protein L24

Chain SR

40S ribosomal protein S6

Chain ST

40S ribosomal protein S8