IL_7ZJX_304

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_304 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.2631

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|PSU|3447
7ZJX|1|L5|C|3448
7ZJX|1|L5|A|3449
7ZJX|1|L5|A2M|3450
7ZJX|1|L5|A|3451
7ZJX|1|L5|G|3452
7ZJX|1|L5|U|3453
*
7ZJX|1|L5|A|3464
7ZJX|1|L5|A|3465
7ZJX|1|L5|PSU|3466
7ZJX|1|L5|G|3467
7ZJX|1|L5|A|3468
7ZJX|1|L5|A|3469
7ZJX|1|L5|G|3470

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain Ll

60S ribosomal protein L36