IL_7ZJX_317

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_317 not in the Motif Atlas

Geometric match to IL_8C3A_444

Geometric discrepancy: 0.1874

The information below is about IL_8C3A_444

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

7ZJX|1|L5|G|4490
7ZJX|1|L5|A|4491
7ZJX|1|L5|G|4492
7ZJX|1|L5|C|4493
*
7ZJX|1|L5|G|4693
7ZJX|1|L5|A|4694
7ZJX|1|L5|A|4695
7ZJX|1|L5|C|4696

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Li

60S ribosomal protein L35a