IL_7ZJX_321

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_321 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.3936

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7ZJX|1|S2|G|23
7ZJX|1|S2|C|24
7ZJX|1|S2|A|25
*
7ZJX|1|S2|PSU|650
7ZJX|1|S2|A|651
7ZJX|1|S2|PSU|652

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SU

40S ribosomal protein S9

Chain Si

40S ribosomal protein S23