3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCA*(PSU)A(PSU)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_321 not in the Motif Atlas
Geometric match to IL_7A0S_107
Geometric discrepancy: 0.3936
The information below is about IL_7A0S_107
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

7ZJX|1|S2|G|23
7ZJX|1|S2|C|24
7ZJX|1|S2|A|25
*
7ZJX|1|S2|PSU|650
7ZJX|1|S2|A|651
7ZJX|1|S2|PSU|652

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SU
40S ribosomal protein S9
Chain Si
40S ribosomal protein S23

Coloring options:


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