3D structure

PDB id
7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome programmed with SECIS and SBP2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GACAGGA(OMU)UG*CUCGAUUC
Length
18 nucleotides
Bulged bases
7ZJX|1|S2|G|1286, 7ZJX|1|S2|U|1316
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJX_334 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.276
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7ZJX|1|S2|G|1282
7ZJX|1|S2|A|1283
7ZJX|1|S2|C|1284
7ZJX|1|S2|A|1285
7ZJX|1|S2|G|1286
7ZJX|1|S2|G|1287
7ZJX|1|S2|A|1288
7ZJX|1|S2|OMU|1289
7ZJX|1|S2|U|1290
7ZJX|1|S2|G|1291
*
7ZJX|1|S2|C|1310
7ZJX|1|S2|U|1311
7ZJX|1|S2|C|1312
7ZJX|1|S2|G|1313
7ZJX|1|S2|A|1314
7ZJX|1|S2|U|1315
7ZJX|1|S2|U|1316
7ZJX|1|S2|C|1317

Current chains

Chain S2
18S rRNA

Nearby chains

Chain B
Selenocysteine insertion sequence-binding protein 2
Chain SD
Ubiquitin carboxyl extension protein 80
Chain SH
40S ribosomal protein S29
Chain SV
S10_plectin domain-containing protein
Chain SX
40S ribosomal protein S12

Coloring options:


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