IL_7ZJX_334
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACAGGA(OMU)UG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 7ZJX|1|S2|G|1286, 7ZJX|1|S2|U|1316
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_334 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.276
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7ZJX|1|S2|G|1282
7ZJX|1|S2|A|1283
7ZJX|1|S2|C|1284
7ZJX|1|S2|A|1285
7ZJX|1|S2|G|1286
7ZJX|1|S2|G|1287
7ZJX|1|S2|A|1288
7ZJX|1|S2|OMU|1289
7ZJX|1|S2|U|1290
7ZJX|1|S2|G|1291
*
7ZJX|1|S2|C|1310
7ZJX|1|S2|U|1311
7ZJX|1|S2|C|1312
7ZJX|1|S2|G|1313
7ZJX|1|S2|A|1314
7ZJX|1|S2|U|1315
7ZJX|1|S2|U|1316
7ZJX|1|S2|C|1317
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain B
- Selenocysteine insertion sequence-binding protein 2
- Chain SD
- Ubiquitin carboxyl extension protein 80
- Chain SH
- 40S ribosomal protein S29
- Chain SV
- S10_plectin domain-containing protein
- Chain SX
- 40S ribosomal protein S12
Coloring options: