IL_7ZJX_335

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

7ZJX|1|S2|OMU|1327

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_335 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1612

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

7ZJX|1|S2|G|1326
7ZJX|1|S2|OMU|1327
7ZJX|1|S2|G|1328
*
7ZJX|1|S2|C|1503
7ZJX|1|S2|C|1504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SH

40S ribosomal protein S29

Chain SV

S10_plectin domain-containing protein