IL_7ZJX_339
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GG*UCUGU
- Length
- 7 nucleotides
- Bulged bases
- 7ZJX|1|S2|C|1494, 7ZJX|1|S2|U|1495
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_339 not in the Motif Atlas
- Geometric match to IL_4LFB_045
- Geometric discrepancy: 0.2886
- The information below is about IL_4LFB_045
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
7ZJX|1|S2|G|1335
7ZJX|1|S2|G|1336
*
7ZJX|1|S2|U|1493
7ZJX|1|S2|C|1494
7ZJX|1|S2|U|1495
7ZJX|1|S2|G|1496
7ZJX|1|S2|U|1497
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S29
- Chain SO
- 40S ribosomal protein S3
- Chain SV
- S10_plectin domain-containing protein
- Chain Sf
- 40S ribosomal protein S20
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