IL_7ZJX_342
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGC*(OMG)AGG
- Length
- 9 nucleotides
- Bulged bases
- 7ZJX|1|S2|U|1398
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_342 not in the Motif Atlas
- Geometric match to IL_8P9A_419
- Geometric discrepancy: 0.3219
- The information below is about IL_8P9A_419
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
7ZJX|1|S2|C|1396
7ZJX|1|S2|A|1397
7ZJX|1|S2|U|1398
7ZJX|1|S2|G|1399
7ZJX|1|S2|C|1400
*
7ZJX|1|S2|OMG|1448
7ZJX|1|S2|A|1449
7ZJX|1|S2|G|1450
7ZJX|1|S2|G|1451
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SG
- Guanine nucleotide-binding protein subunit beta-2-like 1
- Chain SO
- 40S ribosomal protein S3
- Chain Sb
- 40S ribosomal protein uS9
- Chain Sc
- 40S ribosomal protein S17
- Chain Sf
- 40S ribosomal protein S20
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