IL_7ZJX_353
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAAAA(PSU)(PSU)*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJX_353 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.3879
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7ZJX|1|S2|G|808
7ZJX|1|S2|A|809
7ZJX|1|S2|A|810
7ZJX|1|S2|A|811
7ZJX|1|S2|A|812
7ZJX|1|S2|A|813
7ZJX|1|S2|A|814
7ZJX|1|S2|PSU|815
7ZJX|1|S2|PSU|816
*
7ZJX|1|S2|A|850
7ZJX|1|S2|C|851
7ZJX|1|S2|C|852
7ZJX|1|S2|G|853
7ZJX|1|S2|C|854
7ZJX|1|S2|A|855
7ZJX|1|S2|G|856
7ZJX|1|S2|C|857
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S4
- Chain SU
- 40S ribosomal protein S9
- Chain SW
- 40S ribosomal protein S11
- Chain Sh
- 40S ribosomal protein S15a
Coloring options: