IL_7ZO1_011

3D structure

PDB id

7ZO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 bound to CD34 off-target9 DNA substrate

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUA*TTC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

7ZO1|1|A|G|16
7ZO1|1|A|U|17
7ZO1|1|A|A|18
*
7ZO1|1|C|DT|3
7ZO1|1|C|DT|4
7ZO1|1|C|DC|5

Current chains

Chain A

CD34 sgRNA

Chain C

CD34 off-target9 DNA target strand

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9/Csn1