IL_7ZOD_028

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

7ZOD|1|b|G|776, 7ZOD|1|b|A|788, 7ZOD|1|b|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZOD_028 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0655

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7ZOD|1|b|G|775
7ZOD|1|b|G|776
7ZOD|1|b|G|777
*
7ZOD|1|b|C|787
7ZOD|1|b|A|788
7ZOD|1|b|A|789
7ZOD|1|b|U|790
7ZOD|1|b|C|791

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain s

50S ribosomal protein L22