IL_7ZOD_048

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7ZOD|1|b|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZOD_048 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.1237

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7ZOD|1|b|C|1208
7ZOD|1|b|U|1209
7ZOD|1|b|G|1210
7ZOD|1|b|C|1211
7ZOD|1|b|G|1212
7ZOD|1|b|A|1213
7ZOD|1|b|A|1214
7ZOD|1|b|G|1215
*
7ZOD|1|b|U|1234
7ZOD|1|b|G|1235
7ZOD|1|b|G|1236
7ZOD|1|b|A|1237
7ZOD|1|b|G|1238

Current chains

Chain b

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L20