IL_7ZOD_071

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGAC*GCUCG

Length

9 nucleotides

Bulged bases

7ZOD|1|b|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZOD_071 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.1908

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7ZOD|1|b|C|1725
7ZOD|1|b|G|1726
7ZOD|1|b|A|1727
7ZOD|1|b|C|1728
*
7ZOD|1|b|G|1731
7ZOD|1|b|C|1732
7ZOD|1|b|U|1733
7ZOD|1|b|C|1734
7ZOD|1|b|G|1735

Current chains

Chain b

23S rRNA

Nearby chains