IL_7ZP8_013

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_013 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4705

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZP8|1|b|C|274
7ZP8|1|b|C|275
7ZP8|1|b|U|276
7ZP8|1|b|G|277
7ZP8|1|b|A|278
7ZP8|1|b|A|279
7ZP8|1|b|U|280
7ZP8|1|b|C|281
*
7ZP8|1|b|G|359
7ZP8|1|b|U|360
7ZP8|1|b|G|361
7ZP8|1|b|A|362
7ZP8|1|b|G|363

Current chains

Chain b

23S rRNA

Nearby chains