IL_7ZP8_049

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_049 not in the Motif Atlas

Geometric match to IL_5J7L_293

Geometric discrepancy: 0.0747

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7ZP8|1|b|C|1357
7ZP8|1|b|G|1358
7ZP8|1|b|A|1359
7ZP8|1|b|G|1360
7ZP8|1|b|G|1361
*
7ZP8|1|b|C|1370
7ZP8|1|b|G|1371
7ZP8|1|b|U|1372
7ZP8|1|b|A|1373
7ZP8|1|b|G|1374

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain c

50S ribosomal protein L2