IL_7ZP8_066

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_066 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1875

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7ZP8|1|b|U|1720
7ZP8|1|b|G|1721
7ZP8|1|b|A|1722
7ZP8|1|b|A|1723
7ZP8|1|b|G|1724
*
7ZP8|1|b|U|1736
7ZP8|1|b|G|1737
7ZP8|1|b|G|1738
7ZP8|1|b|A|1739
7ZP8|1|b|G|1740

Current chains

Chain b

23S rRNA

Nearby chains