IL_7ZP8_072

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_072 not in the Motif Atlas

Geometric match to IL_4V9F_068

Geometric discrepancy: 0.277

The information below is about IL_4V9F_068

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

7ZP8|1|b|G|1846
7ZP8|1|b|A|1847
7ZP8|1|b|A|1848
7ZP8|1|b|G|1849
*
7ZP8|1|b|C|1893
7ZP8|1|b|C|1894

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2