IL_7ZP8_089

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_089 not in the Motif Atlas

Geometric match to IL_5TBW_104

Geometric discrepancy: 0.1776

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7ZP8|1|b|U|2457
7ZP8|1|b|G|2458
7ZP8|1|b|A|2459
*
7ZP8|1|b|U|2493
7ZP8|1|b|G|2494

Current chains

Chain b

23S rRNA

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16

Chain y

50S ribosomal protein L27