IL_7ZPQ_010

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1015

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7ZPQ|1|2|U|117
7ZPQ|1|2|U|118
7ZPQ|1|2|A|119
7ZPQ|1|2|U|120
7ZPQ|1|2|U|121
7ZPQ|1|2|U|122
*
7ZPQ|1|2|A|295
7ZPQ|1|2|U|296
7ZPQ|1|2|U|297
7ZPQ|1|2|C|298
7ZPQ|1|2|A|299

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AI

40S ribosomal protein S8