IL_7ZPQ_014

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7ZPQ|1|2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_014 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.2145

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7ZPQ|1|2|G|204
7ZPQ|1|2|U|205
7ZPQ|1|2|A|206
*
7ZPQ|1|2|U|259
7ZPQ|1|2|U|260
7ZPQ|1|2|U|261
7ZPQ|1|2|U|262
7ZPQ|1|2|C|263

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AG

40S ribosomal protein S6-A

Chain AI

40S ribosomal protein S8