IL_7ZPQ_028

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7ZPQ|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_028 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2985

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7ZPQ|1|2|G|514
7ZPQ|1|2|A|515
7ZPQ|1|2|G|516
*
7ZPQ|1|2|C|536
7ZPQ|1|2|G|537
7ZPQ|1|2|A|538
7ZPQ|1|2|G|539
7ZPQ|1|2|G|540
7ZPQ|1|2|A|541
7ZPQ|1|2|A|542
7ZPQ|1|2|C|543

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain Ae

40S ribosomal protein S30-A