3D structure

PDB id
7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.47 Å

Loop

Sequence
ACA*UU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZPQ_030 not in the Motif Atlas
Geometric match to IL_5TBW_039
Geometric discrepancy: 0.2004
The information below is about IL_5TBW_039
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

7ZPQ|1|2|A|518
7ZPQ|1|2|C|519
7ZPQ|1|2|A|520
*
7ZPQ|1|2|U|532
7ZPQ|1|2|U|533

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AJ
40S ribosomal protein S9-A
Chain AY
40S ribosomal protein S24-A

Coloring options:


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